% 7905558 (JID)
@Article{fucose1,
   Author="Murrey, H and Gama, C and Kalovidouris, S and Luo, W  and Driggers, E and Porton, B and Hsieh-Wilson, L",
   Title="{{P}rotein fucosylation regulates synapsin {I}a/{I}b expression and neuronal morphology in primary hippocampal neurons}",
   Journal="Proc. Natl. Acad. Sci. U.S.A.",
   Year="2006",
   Volume="103",
   Pages="21--26",
   Month="Jan"
}

% 15686343 
@Article{fucose2,
   Author="Kalovidouris, S.A. and Gama, C.I. and Lee, L.W. and Hsieh-Wilson, L.C.",
   Title="{{A} role for fucose alpha(1-2) galactose carbohydrates in neuronal growth}",
   Journal="J. Am. Chem. Soc.",
   Year="2005",
   Volume="127",
   Pages="1340--1341",
   Month="Feb"
}

@Article{panzeri,
   Author="Panzeri, S and Petersen, R S and Schultz, S R and Lebedev, M and Diamond, M E",
   Title="{{T}he role of spike timing in the coding of stimulus location in rat somatosensory cortex}",
   Journal="Neuron",
   Year="2001",
   Volume="29",
   Pages="769--777",
   Month="Mar"
}

@Article{singer,
   Author="Singer, W",
   Title="{{N}euronal synchrony: a versatile code for the definition of relations?}",
   Journal="Neuron",
   Year="1999",
   Volume="24",
   Pages="49--65",
   Month="Sep"
}

@Article{butts:spiketiming,
   Author="Butts, D A and Weng, C and Jin, J and Yeh, C and Lesica, N and Alonso, J and Stanley, G B",
   Title="{{T}emporal precision in the neural code and the timescales of natural vision}",
   Journal="Nature",
   Year="2007",
   Volume="449",
   Pages="92--95",
   Month="Sep"
}





@Article{wagenaar:stimparms,
   Author="Wagenaar, D A and Pine, J and Potter, S M",
   Title="{{E}ffective parameters for stimulation of dissociated cultures using multi-electrode arrays}",
   Journal="J Neurosci Methods",
   Year="2004",
   Volume="138",
   Pages="27--37",
   Month="Sep"
}

@Article{maeda,
   Author="Maeda, E and Robinson, H and Kawana, A",
   Title="{{T}he mechanisms of generation and propagation of synchronized bursting in developing networks of cortical neurons}",
   Journal="J. Neurosci.",
   Year="1995",
   Volume="15",
   Pages="6834--6845",
   Month="Oct"
}
@Article{wagenaar:bursting,
   Author="Wagenaar, D A and Pine, J and Potter, S M",
   Title="{{A}n extremely rich repertoire of bursting patterns during the development of cortical cultures}",
   Journal="BMC Neurosci",
   Year="2006",
   Volume="7",
   Pages="11"
}

@Article{bading,
   Author="Bading, H and Segal, M and Sucher, N and Dudek, H and Lipton, S and Greenberg, M",
   Title="{{N}-methyl-{D}-aspartate receptors are critical for mediating the effects of glutamate on intracellular calcium concentration and immediate early gene expression in cultured hippocampal neurons}",
   Journal="Neuroscience",
   Year="1995",
   Volume="64",
   Pages="653--664",
   Month="Feb"
}

@Article{arnold,
   Author="Arnold, F and Hofmann, F and Bengtson, C and Wittmann, M and Vanhoutte, P and Bading, H",
   Title="{{M}icroelectrode array recordings of cultured hippocampal networks reveal a simple model for transcription and protein synthesis-dependent plasticity}",
   Journal="J. Physiol. (Lond.)",
   Year="2005",
   Volume="564",
   Pages="3--19",
   Month="Apr"
}

% 7905558 (JID)
@Article{maher,
   Author="Maher, M P and Pine, J and Wright, J and Tai, Y-C",
   Title="{{T}he neurochip: a new multielectrode device for stimulating and recording from cultured neurons}",
   Journal="J Neurosci Methods",
   Year="1999",
   Volume="87",
   Number="1",
   Pages="45--56",
   Month="Feb"
}

@Article{maher2,
   Author="Maher, M P and Wright, J and Pine, J  and Tai, Y C",
   Title="{{A } microstructrue for interfacing with neurons: the Neurochip}",
   Journal="Proc. IEEE Med. Bio ",
   Year="1998",
   Volume="20",
   Number="4",
   Pages="1698--1702"   
}

% 7905558 (JID)
@Article{obaid,
   Author="Obaid, A L and Loew, L M and Wuskell, J P and Salzberg, B M",
   Title="{{N}ovel naphthylstyryl-pyridium potentiometric dyes offer advantages for neural network analysis}",
   Journal="J Neurosci Methods",
   Year="2004",
   Volume="134",
   Number="2",
   Pages="179--190"
}

% 0370626 (JID)
@Article{chien:1,
   Author="Chien, C B and Pine, J",
   Title="{{V}oltage-sensitive dye recording of action potentials and synaptic potentials from sympathetic microcultures}",
   Journal="Biophys J",
   Year="1991",
   Volume="60",
   Number="3",
   Pages="697--711",
}

% 7905558 (JID)
@Article{salpa,
   Author="Wagenaar, D A and Potter, S M",
   Title="{{R}eal-time multi-channel stimulus artifact suppression by local curve fitting}",
   Journal="J Neurosci Methods",
   Year="2002",
   Volume="120",
   Number="2",
   Pages="113--120",
   Month="Oct"
}

% 7905558 (JID)
@Article{chien:2,
   Author="Chien, C B and Pine, J",
   Title="{{A}n apparatus for recording synaptic potentials from neuronal cultures using voltage-sensitive fluorescent dyes}",
   Journal="J Neurosci Methods",
   Year="1991",
   Volume="38",
   Pages="93--105"
   
}

% 7905558 (JID)
@Article{pine1980,
   Author="Pine, J",
   Title="{{R}ecording action potentials from cultured neurons with extracellular microcircuit electrodes}",
   Journal="J Neurosci Methods",
   Year="1980",
   Volume="2",
   Number="1",
   Pages="19--31",
   Month="Feb"
}

% 7804039 (JID)
@Article{biandpoo:arn,
   Author="Bi , G and Poo , M M",
   Title="{{S}ynaptic modification by correlated activity: {H}ebb's postulate revisited}",
   Journal="Annu Rev Neurosci",
   Year="2001",
   Volume="24",
   Pages="139--166"
}

% 7804039 (JID)
@Article{poo:neurotrophins,
   Author="Poo, M M",
   Title="{{N}eurotrophins as Synaptic Modulators}",
   Journal="Nat Rev Neurosci",
   Year="2001",
   Volume="2",
   Pages="24--32"
}


% 0375356 (JID)
@Article{angelides,
   Author="Angelides, K J and Elmer, L W and Loftus, D and Elson, E",
   Title="{{D}istribution and lateral mobility of voltage-dependent sodium channels in neurons}",
   Journal="J Cell Biol",
   Year="1988",
   Volume="106",
   Number="6",
   Pages="1911--1925",
   Month="Jun"
}

% 0410462 (JID)
@Article{biandpoo:nature,
   Author="Bi, G and Poo, M",
   Title="{{D}istributed synaptic modification in neural networks induced by patterned stimulation}",
   Journal="Nature",
   Year="1999",
   Volume="401",
   Number="6755",
   Pages="792--796",
   Month="Oct"
}

% 8102140 (JID)
@Article{biandpoo:jneurosci,
   Author="Bi, G Q and Poo, M M",
   Title="{{S}ynaptic modifications in cultured hippocampal neurons: dependence on spike timing, synaptic strength, and postsynaptic cell type}",
   Journal="J Neurosci",
   Year="1998",
   Volume="18",
   Number="24",
   Pages="10464--10472",
   Month="Dec",
   Note="In Vitro"
}

% 7808616 (JID)
@Article{glia:araque,
   Author="Araque, A and Parpura, V and Sanzgiri, R P and Haydon, P G",
   Title="{{T}ripartite synapses: glia, the unacknowledged partner}",
   Journal="Trends Neurosci",
   Year="1999",
   Volume="22",
   Number="5",
   Pages="208--215",
   Month="May"
}

% 7905558 (JID)
@Article{Ai:lbl,
   Author="Ai, H and Meng, H and Ichinose, I and Jones, S A and Mills, D  and Lvov, Y and Qiao, X",
   Title="{{B}iocompatibility of layer-by-layer self-assembled nanofilm on silicone rubber for neurons}",
   Journal="J Neurosci Methods",
   Year="2003",
   Volume="128",
   Number="1--2",
   Pages="1--8",
   Month="Sep"
}

% 7600111 (JID)
@Article{brewer:b27,
   Author="Brewer, G J and Torricelli, J R and Evege, E K and Price, P J",
   Title="{{O}ptimized survival of hippocampal neurons in {B}27-supplemented {N}eurobasal, a new serum-free medium combination}",
   Journal="J Neurosci Res",
   Year="1993",
   Volume="35",
   Number="5",
   Pages="567--576",
   Month="Aug"
}



% 8102140 (JID)
@Article{colbert,
   Author="Colbert, C M and Johnston, D",
   Title="{{A}xonal action-potential initiation and {N}a+ channel densities in the soma and axon initial segment of subicular pyramidal neurons}",
   Journal="J Neurosci",
   Year="1996",
   Volume="16",
   Number="21",
   Pages="6676--6686",
   Month="Nov"
}

% 8208627 (JID)
@Article{coburn,
   Author="Coburn, B",
   Title="{{N}eural modeling in electrical stimulation}",
   Journal="Crit Rev Biomed Eng",
   Year="1989",
   Volume="17",
   Number="2",
   Pages="133--178"
}

% BDNF and development:  Excellent quote on page 4, right-most column

% 0404511 (JID)
@Article{cohen,
   Author="Cohen-Cory, Susana",
   Title="{{T}he developing synapse: construction and modulation of synaptic structures and circuits}",
   Journal="Science",
   Year="2002",
   Volume="298",
   Number="5594",
   Pages="770--776",
   Month="Oct"
}


% 0410462 (JID)
@Article{svoboda:rewiring,
   Author="Chklovskii, D B and Mel, B W and Svoboda, K",
   Title="{{C}ortical rewiring and information storage}",
   Journal="Nature",
   Year="2004",
   Volume="431",
   Number="7010",
   Pages="782--788",
   Month="Oct"
}

% 0212271 (JID)
@Article{opticalrecording,
   Author="Djurisic, M and Zochowski, M and Wachowiak, M and Falk, C  and Cohen, L and Zecevic, D",
   Title="{{O}ptical monitoring of neural activity using voltage-sensitive dyes}",
   Journal="Methods Enzymol",
   Year="2003",
   Volume="361",
   Pages="423--451"
}

% 0163161 (JID)
@Article{loewandfalk,
   Author="Wu, J Y and Lam, Y W and Falk, C X and Cohen, L B and Fang, J and Loew, L and Prechtl, J C and Kleinfeld, D and Tsau, Y",
   Title="{{V}oltage-sensitive dyes for monitoring multineuronal activity in the intact central nervous system}",
   Journal="Histochem J",
   Year="1998",
   Volume="30",
   Number="3",
   Pages="169--187"
}

%standard devel of axons
% 8102140 (JID)
@Article{polarity,
   Author="Dotti, C G and Sullivan, C A and Banker, G A",
   Title="{{T}he establishment of polarity by hippocampal neurons in culture}",
   Journal="J Neurosci",
   Year="1988",
   Volume="8",
   Number="4",
   Pages="1454--1468",
   Month="Apr"
}

%good for looking at dendritic devel
% 8102140 (JID)
@Article{dailey,
   Author="Dailey, M E and Smith, S J",
   Title="{{T}he dynamics of dendritic structure in developing hippocampal slices}",
   Journal="J Neurosci",
   Year="1996",
   Volume="16",
   Number="9",
   Pages="2983--2994",
   Month="May",
   Note="In Vitro"
}


% 0410462 (JID)
@Article{poo:fitzsimonds,
   Author="Fitzsimonds, R M and Song, H J and Poo, M M",
   Title="{{P}ropagation of activity-dependent synaptic depression in simple neural networks}",
   Journal="Nature",
   Year="1997",
   Volume="388",
   Number="6641",
   Pages="439--448",
   Month="Jul"
}

% 0012737 (JID)
@Article{gross1977,
   Author="Gross, G W and Rieske, E and Kruetzbert, G W and Meyer A",
   Title="{{A} New fixed-array multi-microelectrode system designed for long-term monitoring of extracellular single unit neuronal activity in vitro}",
   Journal="Neuroscience Letters",
   Year="1977",
   Volume="6",
   Pages="101--105"
   }

% 0012737 (JID)
@Article{gross1979,
   Author="Gross, G W",
   Title="{{S}imultaneous single unit recording in vitro with a photoetched laser deinsulated  gold multimicroelectrode surface}",
   Journal="IEEE Trans Biomed Eng",
   Year="1979",
   Volume="26",
   Number="5",
   Pages="273--279",
   Month="May"
}


% 0370626 (JID)
@Article{grinvald:rh237,
   Author="Grinvald, A and Hildesheim, R and Farber, I C and Anglister, L",
   Title="{{I}mproved fluorescent probes for the measurement of rapid changes in membrane potential}",
   Journal="Biophys J",
   Year="1982",
   Volume="39",
   Number="3",
   Pages="301--308",
   Month="Sep"
}

% 0012737 (JID)
@Article{grattarola,
   Author="Grattarola, M and Martinoia, S",
   Title="{{M}odeling the neuron-microtransducer junction: from extracellular to patch recording}",
   Journal="IEEE Trans Biomed Eng",
   Year="1993",
   Volume="40",
   Number="1",
   Pages="35--41",
   Month="Jan"
}

% 8100316 (JID)
@Article{goldner,
   Author="Goldner, Joshua S and Bruder, Jan M and Li, Grace and Gazzola, Daniele and Hoffman-Kim, Diane",
   Title="{{N}eurite bridging across micropatterned grooves}",
   Journal="Biomaterials",
   Year="2006",
   Volume="27",
   Number="3",
   Pages="460--472",
   Month="Jan"
}

% 0045503 (JID)
@Article{2ME,
   Author="Grill, R J Jr and Pixley, S K",
   Title="{2-{M}ercaptoethanol is a survival factor for olfactory, cortical and hippocampal neurons in short-term dissociated cell culture}",
   Journal="Brain Res",
   Year="1993",
   Volume="613",
   Number="1",
   Pages="168--172",
   Month="Jun"
}

% 0375404 (JID)
@Article{gold:APs,
   Author="Gold, Carl and Henze, Darrell A and Koch, Christof and Buzsaki, Gyorgy",
   Title="{{O}n the origin of the extracellular action potential waveform: {A} modeling study}",
   Journal="J Neurophysiol",
   Year="2006",
   Volume="95",
   Number="5",
   Pages="3113--3128",
   Month="May",
   Note="Comparative Study"
}

% 0012737 (JID)
@Article{greenberg:diskelectrode,
   Author="Greenberg, R J and Velte, T J and Humayun, M S and Scarlatis, G N and de Juan, E Jr",
   Title="{{A} computational model of electrical stimulation of the retinal ganglion cell}",
   Journal="IEEE Trans Biomed Eng",
   Year="1999",
   Volume="46",
   Number="5",
   Pages="505--514",
   Month="May"
}

% 0375404 (JID)
@Article{henze:2000,
   Author="Henze, D A and Borhegyi, Z and Csicsvari, J and Mamiya, A and Harris, K D and Buzsaki, G",
   Title="{{I}ntracellular features predicted by extracellular recordings in the hippocampus in vivo}",
   Journal="J Neurophysiol",
   Year="2000",
   Volume="84",
   Number="1",
   Pages="390--400",
   Month="Jul"
}

% 0375404 (JID)
@Article{stuart:1998,
   Author="Stuart G, and Spruston N",
   Title="{{D}eterminants of voltage attenuation in neocortical pyramidal neuron dendrites}",
   Journal="J Neurosci",
   Year="1998",
   Volume="18",
   Number="10",
   Pages="3501--3510",
   Month="May"
}
% 0012737 (JID)
@phdthesis{goldthesis,
   Author="Gold, C",
   Title="{{B}iophysics of extracellular action potentials}",
   Journal="Caltech Thesis",
   School = "Caltech",
   Year="2007",
   
}

@phdthesis{chowthesis,
   Author="Chow, G",
   Title="{{L}aser tweezers for moving live, dissociated neurons}",
   Journal="Caltech Thesis",
   School = "Caltech",
   Year="2007",
   
}


@phdthesis{Tooker:thesis,
   Author="Tooker, A",
   Title="{{D}evelopment of Biocompatible Parylene Neurocages for Action Potential Stimulation and Recording}",
   Journal="Caltech Thesis",
   School = "Caltech",
   Year="2007"
   
}

@phdthesis{Chow:thesis,
   Author="Chow, G",
   Title="{{L}aser Tweezers for Moving Live Dissociated Neurons }",
   Journal="Caltech Thesis",
   School = "Caltech",
   Year="2007"
   
}


@phdthesis{Erickson:thesis,
   Author="Erickson, J",
   Title="{{T}he Neurochip: A Complete System for Studying Cultured Neural Network Connectivity}",
   Journal="Caltech Thesis",
   School = "Caltech",
   Year="2007"
   
}

% 8809320 (JID)
@Article{glia:hama,
   Author="Hama, Hiroshi and Hara, Chikako and Yamaguchi, Kazuhiko and Miyawaki, Atsushi",
   Title="{{P}{K}{C} signaling mediates global enhancement of excitatory synaptogenesis in neurons triggered by local contact with astrocytes}",
   Journal="Neuron",
   Year="2004",
   Volume="41",
   Number="3",
   Pages="405--415",
   Month="Feb",
   Note="Comparative Study"
}

@Article{turner,
   Author="Turner, R W and Meyers, D E and Richardson, T L and Barker, J L",
   Title="{{T}he site for initiation of action potential discharge over the somatodendritic axis of rat hippocampal {C}{A}1 pyramidal neurons}",
   Journal="J. Neurosci.",
   Year="1991",
   Volume="11",
   Pages="2270--2280",
   Month="Jul"
}

@inbook{hille,
Author="Hille, B",
Title="{{I}onic Channels of Excitable Membranes}",
Year = "1992",
Publisher = "Sunderland, MA: Sinauer Associates"
   
}
%explains positive spikes in apical dendrite
% 9439510 (JID)
@Article{holtandkoch,
   Author="Holt, G R and Koch, C",
   Title="{{E}lectrical interactions via the extracellular potential near cell bodies}",
   Journal="J Comput Neurosci",
   Year="1999",
   Volume="6",
   Number="2",
   Pages="169--184",
   Month="Mar"
}

% 7905558 (JID)
@Article{patterning:hynd,
   Author="Jun, S B and Hynd, M R and Dowell-Mesfin, N and Smith, K L and Turner, J N and Shain, W and Kim, S J",
   Title="{{L}ow-density neuronal networks cultured using patterned poly-l-lysine on microelectrode arrays}",
   Journal="J Neurosci Methods",
   Year="2007",
   Volume="160",
   Number="2",
   Pages="317--326",
   Month="Mar"
}

% 8102140 (JID)
@Article{glia:haber,
   Author="Haber, Michael and Zhou, Lei and Murai, Keith K",
   Title="{{C}ooperative astrocyte and dendritic spine dynamics at hippocampal excitatory synapses}",
   Journal="J Neurosci",
   Year="2006",
   Volume="26",
   Number="35",
   Pages="8881--8891",
   Month="Aug",
   Note="In Vitro"
}



% 7605074 (JID)
@Article{henze:2001,
   Author="Henze, D A and Buzsaki, G",
   Title="{{A}ction potential threshold of hippocampal pyramidal cells in vivo is increased by recent spiking activity}",
   Journal="Neuroscience",
   Year="2001",
   Volume="105",
   Number="1",
   Pages="121--130"
}

% 8100316 (JID)
@Article{patterning:kam,
   Author="Kam, L and Shain, W and Turner, J N and Bizios, R",
   Title="{{A}xonal outgrowth of hippocampal neurons on micro-scale networks of polylysine-conjugated laminin}",
   Journal="Biomaterials",
   Year="2001",
   Volume="22",
   Number="10",
   Pages="1049--1054",
   Month="May"
}

% 7505876 (JID)
@Article{phototoxicity:1,
   Author="Kalyanaraman, B and Feix, J B and Sieber, F and Thomas, J P and Girotti, A W",
   Title="{{P}hotodynamic action of merocyanine 540 on artificial and natural cell membranes:  involvement of singlet molecular oxygen}",
   Journal="Proc Natl Acad Sci U S A",
   Year="1987",
   Volume="84",
   Number="9",
   Pages="2999--3003",
   Month="May"
}

@Article{collin:bdnf,
   Author="Collin, C and Vicario-Abejon, C and Rubio, M and Wenthold, R and McKay, R and Segal, M",
   Title="{{N}eurotrophins act at presynaptic terminals to activate synapses among cultured hippocampal neurons}",
   Journal="Eur. J. Neurosci.",
   Year="2001",
   Volume="13",
   Pages="1273--1282",
   Month="Apr"
}

@Article{jiang:bdnf,
   Author="Jiang, X. and Tian, F. and Mearow, K. and Okagaki, P. and Lipsky, R.H. and Marini, A.M.",
   Title="{{T}he excitoprotective effect of {N}-methyl-{D}-aspartate receptors is mediated by a brain-derived neurotrophic factor autocrine loop in cultured hippocampal neurons}",
   Journal="J. Neurochem.",
   Year="2005",
   Volume="94",
   Pages="713--722",
   Month="Aug"
}

@Article{horch:bdnf,
   Author="Horch, H W and Katz, L C",
   Title="{{B}{D}{N}{F} release from single cells elicits local dendritic growth in nearby neurons}",
   Journal="Nat. Neurosci.",
   Year="2002",
   Volume="5",
   Pages="1177--1184",
   Month="Nov"
}

@Article{vicario:bdnf,
   Author="Vicario-Abejon, C and Collin, C and McKay, R D and Segal, M",
   Title="{{N}eurotrophins induce formation of functional excitatory and inhibitory synapses between cultured hippocampal neurons}",
   Journal="J. Neurosci.",
   Year="1998",
   Volume="18",
   Pages="7256--7271",
   Month="Sep"
}


% 8102140 (JID)
@Article{ip:BDNF,
   Author="Ip, N Y and Li, Y and Yancopoulos, G D and Lindsay, R M",
   Title="{{C}ultured hippocampal neurons show responses to {B}{D}{N}{F}, {N}{T}-3, and {N}{T}-4, but not {N}{G}{F}}",
   Journal="J Neurosci",
   Year="1993",
   Volume="13",
   Number="8",
   Pages="3394--3405",
   Month="Aug"
}

% 9005499 (JID)
%   Pages="121--130"


% 2985121R (JID)
@Article{phototoxicity:2,
   Author="Feix, J B and Kalyanaraman, B and Chignell, C F and Hall, R D",
   Title="{{D}irect observation of singlet oxygen production by merocyanine 540 associated with phosphatidylcholine liposomes}",
   Journal="J Biol Chem",
   Year="1988",
   Volume="263",
   Number="33",
   Pages="17247--17250",
   Month="Nov"
}

% 8500749 (JID)
@Article{Mgfree,
   Author="Kudoh, S N and Matsuo, A and Kiyosue, K and Kasai, M and Taguchi, T",
   Title="{{L}ong-lasting enhancement of synaptic activity in dissociated cerebral neurons induced by brief exposure to {M}g2+-free conditions}",
   Journal="Neurosci Res",
   Year="1997",
   Volume="28",
   Number="4",
   Pages="337--344",
   Month="Aug"
}

% 0370626 (JID)
@Article{jimbo,
   Author="Jimbo, Y and Tateno, T and Robinson, H P",
   Title="{{S}imultaneous induction of pathway-specific potentiation and depression in networks of cortical neurons}",
   Journal="Biophys J",
   Year="1999",
   Volume="76",
   Number="2",
   Pages="670--678",
   Month="Feb"
}

% 8908639 (JID)
@Article{laminin,
   Author="Lein, P J and Banker, G A and Higgins, D",
   Title="{{L}aminin selectively enhances axonal growth and accelerates the development of polarity by hippocampal neurons in culture}",
   Journal="Dev Brain Res",
   Year="1992",
   Volume="69",
   Number="2",
   Pages="191--197",
   Month="Oct"
}

% 8102140 (JID)
@Article{growthfactors,
   Author="Lowenstein, D H and Arsenault, L",
   Title="{{T}he effects of growth factors on the survival and differentiation of cultured dentate gyrus neurons}",
   Journal="J Neurosci",
   Year="1996",
   Volume="16",
   Number="5",
   Pages="1759--1769",
   Month="Mar"
}

% 8809320 (JID)
@Article{mainen:stimmodel,
   Author="Mainen, Z F and Joerges, J and Huguenard, J R and Sejnowski, T J",
   Title="{{A} model of spike initiation in neocortical pyramidal neurons}",
   Journal="Neuron",
   Year="1995",
   Volume="15",
   Number="6",
   Pages="1427--1439",
   Month="Dec"
}

% 7505876 (JID)
@Article{lauandbi,
   Author="Lau, Pak-Ming and Bi, Guo-Qiang",
   Title="{{S}ynaptic mechanisms of persistent reverberatory activity in neuronal networks}",
   Journal="Proc Natl Acad Sci U S A",
   Year="2005",
   Volume="102",
   Number="29",
   Pages="10333--10338",
   Month="Jul",
   Note="Comparative Study"
}

% 7505876 (JID)
@Article{marrese,
   Author="Marrese, C",
   Title="{{P}reparation of strongly adherent platinum black coatings}",
   Journal="Analytical Chemistry",
   Year="1987",
   Volume="59",
   Pages="217--218",
}

% 8908639 (JID)
@Article{ma,
   Author="Ma, W and Liu, Q Y and Jung, D and Manos, P and Pancrazio, J J and Schaffner, A E and Barker, J L and Stenger, D A",
   Title="{{C}entral neuronal synapse formation on micropatterned surfaces}",
   Journal="Brain Res Dev Brain Res",
   Year="1998",
   Volume="111",
   Number="2",
   Pages="231--243",
   Month="Dec"
}

% 0375404 (JID)
@Article{lowMg,
   Author="Mody, I and Lambert, J D and Heinemann, U",
   Title="{{L}ow extracellular magnesium induces epileptiform activity and spreading depression in rat hippocampal slices}",
   Journal="J Neurophysiol",
   Year="1987",
   Volume="57",
   Number="3",
   Pages="869--888",
   Month="Mar"
}

% 8102140 (JID)
@Article{eytan,
   Author="Eytan, D and Brenner, N and Marom, S",
   Title="{{S}elective adaptation in networks of cortical neurons}",
   Journal="J Neurosci",
   Year="2003",
   Volume="23",
   Number="28",
   Pages="9349--9356",
   Month="Oct"
}

% 8900963 (JID)
@Article{survival:mennerick,
   Author="Mennerick, S and Zorumski, C F",
   Title="{{N}eural activity and survival in the developing nervous system}",
   Journal="Mol Neurobiol",
   Year="2000",
   Volume="22",
   Number="1-3",
   Pages="41--54",
   Month="Aug"
}

% 8102140 (JID)
@Article{shahaf,
   Author="Shahaf, G and Marom, S",
   Title="{{L}earning in networks of cortical neurons}",
   Journal="J Neurosci",
   Year="2001",
   Volume="21",
   Number="22",
   Pages="8782--8788",
   Month="Nov"
}

% 7505876 (JID)
@Article{fucose,
   Author="Murrey, Heather E and Gama, Cristal I and Kalovidouris, Stacey A and Luo, Wen-I and Driggers, Edward M and Porton, Barbara and Hsieh-Wilson, Linda C",
   Title="{{P}rotein fucosylation regulates synapsin {I}a/{I}b expression and neuronal morphology  in primary hippocampal neurons}",
   Journal="Proc Natl Acad Sci U S A",
   Year="2006",
   Volume="103",
   Number="1",
   Pages="21--26",
   Month="Jan",
   Note="Comparative Study"
}

%states C ~30pF
% 7600130 (JID)
@Article{offenhausser,
   Author="Offenhausser, A and Sprossler, C and Matsuzawa, M and Knoll, W",
   Title="{{E}lectrophysiological development of embryonic hippocampal neurons from the rat grown on synthetic thin films}",
   Journal="Neurosci Lett",
   Year="1997",
   Volume="223",
   Number="1",
   Pages="9--12",
   Month="Feb"
}

% 8809320 (JID)
@Article{nagerl,
   Author="Nagerl, U Valentin and Eberhorn, Nicola and Cambridge, Sidney B and Bonhoeffer, Tobias",
   Title="{{B}idirectional activity-dependent morphological plasticity in hippocampal neurons}",
   Journal="Neuron",
   Year="2004",
   Volume="44",
   Number="5",
   Pages="759--767",
   Month="Dec",
   Note="In Vitro"
}

% 0043312 (JID)
@Article{chronaxie,
   Author="Nowak, L G and Bullier, J",
   Title="{{A}xons, but not cell bodies, are activated by electrical stimulation in cortical gray matter. {I}{I}. {E}vidence from selective inactivation of cell bodies and axon initial segments}",
   Journal="Exp Brain Res",
   Year="1998",
   Volume="118",
   Number="4",
   Pages="489--500",
   Month="Feb",
   Note="In Vitro"
}


% 
@Article{robinson,
   Author="Robinson, D A",
   Title="{{T}he electrical properties of metal microelectrodes}",
   Journal="Proc. IEEE",
   Year="1968",
   Volume="56",
   Number="6",
   Pages="1065--1072",
   Month="June"   
}

% 
@Article{rose:robblee,
   Author="Rose T L, and Robblee L S",
   Title="{{E}lectrical stimulation with Pt Electrodes: Electrochemically safe charge injection limits with 0.2 ms pulses}",
   Journal="IEEE Trans. On Biomed. Eng",
   Year="1990",
   Volume="37",
   Number="11",
   Pages="1118--1120",
   Month="November",
   Note="microelectrodes"
}


% on/off behavior or synapses, a critical mass 
@Article{rose:ensembles,
   Author="Rose G, Siebler M ",
   Title="{{C}ooperative effects of neuronal ensembles }",
   Journal="Exp Brain Res",
   Year="1995",
   Volume="106",
   Pages="106--110",
      Note="modeling"
}

%0012737 (JID)
@Article{ruaro,
   Author="Ruaro, M E and Bonifazi, P and Torre, V",
   Title="{{T}oward the neurocomputer: image processing and pattern recognition with neuronal  cultures}",
   Journal="IEEE Trans Biomed Eng",
   Year="2005",
   Volume="52",
   Number="3",
   Pages="371--383",
   Month="Mar"
}
%good old school reading about extracellular potentials. Gold is %similar
% 0370626 (JID)
@Article{rall,
   Author="Rall, W",
   Title="{{E}lectrophysiology of a dendritic neuron model}",
   Journal="Biophys J",
   Year="1962",
   Volume="2",
   Pages="145--167",
   Month="Mar"
}

% 7605074 (JID)
@Article{rattay:modelstim,
   Author="Rattay, F",
   Title="{{T}he basic mechanism for the electrical stimulation of the nervous system}",
   Journal="Neuroscience",
   Year="1999",
   Volume="89",
   Number="2",
   Pages="335--346",
   Month="Mar"
}


% 7905558 (JID)
@Article{patterning:scholl,
   Author="Scholl, M and Sprossler, C and Denyer, M and Krause, M and Nakajima, K and Maelicke, A and Knoll, W and Offenhausser, A",
   Title="{{O}rdered networks of rat hippocampal neurons attached to silicon oxide surfaces}",
   Journal="J Neurosci Methods",
   Year="2000",
   Volume="104",
   Number="1",
   Pages="65--75",
   Month="Dec"
}

% 0410462 (JID)
@Article{spitzer:devel,
   Author="Spitzer, Nicholas C",
   Title="{{E}lectrical activity in early neuronal development}",
   Journal="Nature",
   Year="2006",
   Volume="444",
   Number="7120",
   Pages="707--712",
   Month="Dec"
}

% 0375404 (JID)
@Article{bdnf:scharfman,
   Author="Scharfman, H E",
   Title="{{H}yperexcitability in combined entorhinal/hippocampal slices of adult rat after exposure to brain-derived neurotrophic factor}",
   Journal="J Neurophysiol",
   Year="1997",
   Volume="78",
   Number="2",
   Pages="1082--1095",
   Month="Aug"
}

% 7905558 (JID). Suggest <5um pattern and neurites don't form
@Article{patterning:stenger,
   Author="Stenger, D A and Hickman, J J and Bateman, K E and Ravenscroft, M S and Ma, W and Pancrazio, J J and Shaffer, K and Schaffner, A E and Cribbs, D H and Cotman, C W",
   Title="{{M}icrolithographic determination of axonal/dendritic polarity in cultured hippocampal neurons}",
   Journal="J Neurosci Methods",
   Year="1998",
   Volume="82",
   Number="2",
   Pages="167--173",
   Month="Aug"
}

% 8100316 (JID)
@Article{patterning:sorribas,
   Author="Sorribas, Helga and Padeste, Celestino and Tiefenauer, Louis",
   Title="{{P}hotolithographic generation of protein micropatterns for neuron culture applications}",
   Journal="Biomaterials",
   Year="2002",
   Volume="23",
   Number="3",
   Pages="893--900",
   Month="Feb"
}

% 2049599 
@Article{buchhalter,
   Author="Buchhalter, J and Dichter, M",
   Title="{{E}lectrophysiological comparison of pyramidal and stellate nonpyramidal neurons in dissociated cell culture of rat hippocampus}",
   Journal="Brain Res. Bull.",
   Year="1991",
   Volume="26",
   Pages="333--338",
   Month="Mar"
}


% 0375404 (JID)
@Article{passivemembranes,
   Author="Spruston, N and Johnston, D",
   Title="{{P}erforated patch-clamp analysis of the passive membrane properties of three classes of hippocampal neurons}",
   Journal="J Neurophysiol",
   Year="1992",
   Volume="67",
   Number="3",
   Pages="508--529",
   Month="Mar",
   Note="In Vitro"
}

% 0012737 (JID)
@Article{circularelectrodes,
   Author="Wiley, J D and Webster, J G",
   Title="{{A}nalysis and control of the current distribution under circular dispersive electrodes}",
   Journal="IEEE Trans Biomed Eng",
   Year="1982",
   Volume="29",
   Number="5",
   Pages="381--385",
   Month="May"
}

% 7905558 (JID)
@Article{patterning:wyart,
   Author="Wyart, C and Ybert, C and Bourdieu, L and Herr, C and Prinz, C and Chatenay, D",
   Title="{{C}onstrained synaptic connectivity in functional mammalian neuronal networks grown on patterned surfaces}",
   Journal="J Neurosci Methods",
   Year="2002",
   Volume="117",
   Number="2",
   Pages="123--131",
   Month="Jun"
}

% 8102140 (JID)
@Article{wittenberg,
   Author="Wittenberg, Gayle M and Wang, Samuel S-H",
   Title="{{M}alleability of spike-timing-dependent plasticity at the {C}{A}3-{C}{A}1 synapse}",
   Journal="J Neurosci",
   Year="2006",
   Volume="26",
   Number="24",
   Pages="6610--6617",
   Month="Jun",
   Note="Comparative Study"
}

% 100962781 (JID)
@Article{glia:volterra,
   Author="Volterra, Andrea and Meldolesi, Jacopo",
   Title="{{A}strocytes, from brain glue to communication elements: the revolution continues}",
   Journal="Nat Rev Neurosci",
   Year="2005",
   Volume="6",
   Number="8",
   Pages="626--640",
   Month="Aug"
}


% 9809671 (JID)
@Article{thomas:1972,
   Author="Thomas, C A and Springer, P A and Loeb, G E and Berwald-Netter, Y and Okun, L M",
   Title="{{A} miniature microelectrode array to monitor the bioelectric activity of cultured cells}",
   Journal="Exp Cell Res",
   Year="1972",
   Volume="74",
   Pages="61--66"
}






% 101088663 (JID)
@Article{pei,
   Author="Vancha, Ajith R and Govindaraju, Suman and Parsa, Kishore V L and Jasti, Madhuri and Gonzalez-Garcia, Maribel and Ballestero, Rafael P",
   Title="{{U}se of polyethyleneimine polymer in cell culture as attachment factor and lipofection enhancer}",
   Journal="BMC Biotechnol",
   Year="2004",
   Volume="4",
   Pages="23",
   Month="Oct"
}

% 0404511 (JID)
@Article{glia:ullian2001,
   Author="Ullian, E M and Sapperstein, S K and Christopherson, K S and Barres, B A",
   Title="{{C}ontrol of synapse number by glia}",
   Journal="Science",
   Year="2001",
   Volume="291",
   Number="5504",
   Pages="657--661",
   Month="Jan"
}

% 101235338 (JID)
@Article{fromherz,
   Author="Voelker, M and Fromherz, P",
   Title="{{S}ignal transmission from individual mammalian nerve cell to field-effect transistor}",
   Journal="Small",
   Year="2005",
   Volume="1",
   Number="2",
   Pages="206--210",
   Month="Feb"
}

% 8809320 (JID)
@Article{zito,
   Author="Zito, K and Svoboda, K",
   Title="{{A}ctivity-dependent synaptogenesis in the adult {M}ammalian cortex}",
   Journal="Neuron",
   Year="2002",
   Volume="35",
   Number="6",
   Pages="1015--1017",
   Month="Sep"
}

% 7505876 (JID)
@Article{yang2003,
   Author="Yang, Y and Ge, W and Chen, Y and Zhang, Z and Shen, W and Wu, C and Poo, MM and Duan, S",
   Title="{{C}ontribution of astrocytes to hippocampal long-term potentiation through release  of {D}-serine}",
   Journal="Proc Natl Acad Sci U S A",
   Year="2003",
   Volume="100",
   Number="25",
   Pages="15194--15199",
   Month="Dec"
}

% 8806785 (JID)
@Article{glia:ullian2004,
   Author="Ullian, Erik M and Christopherson, Karen S and Barres, Ben A",
   Title="{{R}ole for glia in synaptogenesis}",
   Journal="Glia",
   Year="2004",
   Volume="47",
   Number="3",
   Pages="209--216",
   Month="Aug"
}

% 7905558 (JID)
@Article{claverol,
   Author="Claverol-Tinture, E and Pine, J",
   Title="{{E}xtracellular potentials in low-density dissociated neuronal cultures}",
   Journal="J Neurosci Methods",
   Year="2002",
   Volume="117",
   Number="1",
   Pages="13--21",
   Month="May"
}


% 7905558 (JID)
@Article{chklovskii,
   Author="Chklovskii, DB and Mel, B W and Svoboda, K",
   Title="{{C}ortical rewiring and information storage}",
   Journal="Nature",
   Year="2004",
   Volume="431",
   Pages="782--788"
}

@Article{destexhe,
   Author="Destexhe, A and Marder, E",
   Title="{{P}lasticity in single neuron and circuit computations}",
   Journal="Nature",
   Year="2004",
   Volume="431",
   Pages="789--795"
}


@Article{hua:smith,
Author = "Hua, J Y and Smith, S",
Title = "{N}eural activity and the dynamics of central nervous system development",
Journal = "Nat. Neurosci.",
Year = "2004",
Volume = "7",
Number = "4",
Pages = "327--332"
}


@Article{branch,
Author = "Branch, D and Wheeler, B and Brewer, G and Leckband, D",
Title = "{L}ong-term 	Maintenance of 	Patterns of Hippocampal Pyramidal Cells on Substrates of Polyethylene Glycol and Microstamped Polylysine",
Journal = "IEEE Trans. Biomed. Eng.",
Year = "2000",
Volume = "47",
Number = "3",
Pages = "290--300"
}

@Article{zeck,
Author = "Zeck, G and Fromherz, P",
Title = "{N}oninvasive neuroelectric interfacing with synaptically connected snail neurons immobilized on a semiconductor chip.",
Journal = "PNAS",
Year = "2001",
Volume = "98",
Number = "18",
Pages = "10457--62"
}

@Article{zhang,
Author = "Zhang, L and Poo, M M",
Title = "{E}lectrical activity and development of neural circuits.",
Journal = "Nat. Neurosci. Suppl.",
Year = "2001",
Volume = "4",
Pages = "1207--1214"
}

@Article{merz,
Author = "Merz, M. and Fromherz, P.",
Title = "{P}olyester microstructures for topographical control of outgrowth and 	synapse formation with snail neurons.",
Journal = "Adv Materials",
Year = "2002",
Volume = "14",
Pages = "141-144"
}


@Article{markram,
Author = "Markram, H and Lubke, J and Frotscher, M and Sakmann, B",
Title = "{R}egulation of Synaptic Efficacy by Coincidence of Postsynaptic APs and EPSPs.",
Journal = "Science",
Year = "1997",
Volume = "275",
Pages = "213--215"
}

@Article{bdnf:lessman,
Author = "Lessmann, V and Gottmann, K and Heumann, R",
Title = "{{B}DNF  and NT-4/5 enhance glutamatergic synaptic transmission in cultured hippocampal neurones.}",
Journal = "Neuroreport",
Year = "1994",
Volume = "6",
Pages = "21--25"
}

@Article{bdnf:levine,
   Author="Levine, E  and Dreyfus, C and Black, I and Plummer, M",
   Title="{{B}rain-derived neurotrophic factor rapidly enhances synaptic transmission in hippocampal neurons via postsynaptic tyrosine kinase receptors}",
   Journal="Proc. Natl. Acad. Sci. U.S.A.",
   Year="1995",
   Volume="92",
   Pages="8074--8077",
   Month="Aug"
}

@Article{regehr,
Author = "Regehr, W and Pine, J and Rutledge, D",
Title = "{A }long-term in vitro silicon-based microelectrode-neuron connection",
Journal = "IEEE Trans. Biomed. Eng",
Year = "1988",
Volume = "35",
Number = "12",
Pages = "1023--1032"
}

%% my publications
@Inproceedings{embs2004,
Author = "Tooker, A and Meng, E and Erickson, J and Tai, Y-C and Pine, J",
Title = "{D}evelopment of biocompatible parylene neurocages",
Booktitle = "Proc. IEEE-EMBS, San Francisco, CA, USA",
Month = "September",
Year = "2004",
Pages = "2542--2545"
}



@Inproceedings{erickson:sfn2007,
Author = "Erickson, J and Tooker, A and Tai, Y-C and Pine, J",
Title = "{C}aged neuron multi-electrode array: a new tool for probing connectivity in cultured neural networks",
Booktitle = "Proc. Society for Neuroscience Annual Conference",
Address = "San Diego, CA",
Month = "November",
Year = "2007",
}

@Inproceedings{erickson:mea2006,
Author = "Erickson, J and Tooker, A and Tai, Y-C and Pine, J",
Title = "{P}rogress on the Caged-Neuron {M}{E}{A} Project",
Booktitle = "Proc. 5th International Meeting on Substrate Integrated Multi-Electrode Arrays",
Address = "Reutlingen, Germany",
Month = "July",
Year = "2006",
Pages = "192-193"
}


@Inproceedings{erickson:sfn2005,
Author = "Erickson, J and Tooker, A and Tai, Y-C and Pine, J",
Title = "{C}aged neuron multi-electrode array: a new generation of neurochip",
Booktitle = "Proc. Society for Neuroscience Annual Conference",
Address = "Washington, DC",
Month = "November",
Year = "2005",
}


@Inproceedings{erickson:microtas2004,
Author = "Tooker, A and Erickson, J  and Tai, Y-C and Pine, J",
Title = "{R}obust and biocompatible neurocages",
Booktitle = "Proc. MicroTAS",
Address = "Malmo, Sweden",
Year = "2004",
}


@Inproceedings{erickson:mea2004,
Author = "Erickson, J and Tooker, A and Tai, Y-C and Pine, J",
Title = "{C}aged Neuron Multi-Electrode Array",
Booktitle = "Proc. 4th International Meeting on Substrate Integrated Multi-Electrode Arrays",
Address = "Reutlingen, Germany",
Month = "July",
Year = "2004",
Pages = "52--53"
}


@Inproceedings{erickson:microtas2003,
Author = "Meng, E and Tai, Y-C and Erickson, J and Pine, J",
Title = "{P}arylene Technology for Mechanically Robust Neuro-cages",
Booktitle = "Proc. Micro Transducers and Systems",
Year = "2003",
Month = "October",
Address = " Squaw Valley, CA",
}


@Inproceedings{erickson:transducers2003,
Author = "He, Q and Meng, E and Tai, Y-C and Rutherglen, C and Erickson, J and Pine, J",
Title = "{P}arylene Technology for Mechanically Robust Neuro-cages",
Booktitle = "Proc. Transducers",
Year = "2003",
Month = "October",
Address = " Boston, MA",
Pages = "995--998"
}