Mayo, Stephen L.

Advisor — 45 thesises

• Nisthal, Alex — Accelerating the Interplay Between Theory and Experiment in Protein Design (2012, Dissertation (Ph.D.))
• Hom, Geoffrey Kai Tong — Advances in Computational Protein Design: Development of More Efficient Search Algorithms and their Application to the Full-Sequence Design of Larger Proteins (2005, Dissertation (Ph.D.))
• Shah, Premal S. — Advances in Force Field Development and Sequence Optimization Methods for Computational Protein Design (2005, Dissertation (Ph.D.))
• Privett, Heidi Kathleen — An Iterative Approach to de novo Computational Enzyme Design and the Successful Application to the Kemp Elimination (2009, Dissertation (Ph.D.))
• Mao, Jessica — Applications of Computational Protein Design (2006, Dissertation (Ph.D.))
• Moore, Matthew Michaels — Applications of Computational Protein Design to Red Fluorescent Proteins (2013, Dissertation (Ph.D.))
• Su, Yao-ying Alyce — Backbone Flexibility in Protein Design Theory and Experiment (1998, Dissertation (Ph.D.))
• Wang, Jingzhou — CDRxAb: Antibody Small-Molecule Conjugates with Computationally Designed Target-Binding Synergy (2021, Dissertation (Ph.D.))
• Strop, Pavel — Characterization of the Mechanosensitive Channel of Large Conductance (2002, Dissertation (Ph.D.))
• Gordon, David Benjamin — Combinatorial Optimization in Computational Protein Design (2000, Dissertation (Ph.D.))
• Huang, Po-Ssu — Computational Design and Experimental Characterization of Protein Oligomers (2004, Dissertation (Ph.D.))
• Friesenhahn, Nicholas James — Computational Design of Protein-Based Biosensors for Nicotine (2026, Dissertation (Ph.D.))
• Mou, Yun — Computational Design of Self-Assembling Proteins and Protein-DNA Nanowires (2014, Dissertation (Ph.D.))
• Bolon, Daniel N. — Computational Enzyme Design (2002, Dissertation (Ph.D.))
• Sosa Padilla Araujo, Bernardo — Computational Enzyme Design (2014, Dissertation (Ph.D.))
• Alvizo, Oscar — Computational Protein Design Force Field Optimization: A Negative Design Approach (2007, Dissertation (Ph.D.))
• Wannier, Timothy Milton — Computationally Guided Monomerization of Red Fluorescent Proteins of the Class Anthozoa (2015, Dissertation (Ph.D.))
• Voigt, Christopher Ashby — Computationally Optimizing the Directed Evolution of Proteins (2003, Dissertation (Ph.D.))
• Lee, Toni Marie — Computationally-Guided Thermostabilization of the Primary Endoglucanase from Hypocrea jerorina for Cellulosic Biofuel Production (2014, Dissertation (Ph.D.))
• Berry, Alexandria Helen T. — Designing Conformational Control of Human Tissue Transglutaminase (2014, Dissertation (Ph.D.))
• Choi, Eun Jung — Development and Applications of Computational Protein Design (2006, Dissertation (Ph.D.))
• Vizcarra, Christina Luisa — Development and Evaluation of Protein Design Methods for Functional Targets (2008, Dissertation (Ph.D.))
• Allen, Benjamin Daniel — Development and Validation of Optimization Methods for the Design of Protein Sequences and Combinatorial Libraries (2009, Dissertation (Ph.D.))
• Huang, Shan — DNA-Guided Genome Manipulation in Escherichia coli (2023, Dissertation (Ph.D.))
• Hamdouche, Samy — Engineered Antibody and Monobody Domains with T Cell Receptor-Like Selectivity for Tumor Associated Peptide-MHC Antigens (2014, Dissertation (Ph.D.))
• Kym, Eugene Yongshik (Gene) — Engineered Discoidin Domain from Factor VIII Binds αvβ3 Integrin with Antibody-like Affinity (2014, Dissertation (Ph.D.))
• Keeffe, Jennifer Rae — Engineering Cyanovirin-N for Enhanced Viral Neutralization (2009, Dissertation (Ph.D.))
• Caldera, Luis Fernando — Engineering Immunological Solutions for Pandemic-Level Threats (2026, Dissertation (Ph.D.))
• Cahn, Jackson Kenai Blender — Engineering, Predicting, and Understanding Nicotinamide Cofactor Specificity (2016, Dissertation (Ph.D.))
• Cornejo de los Santos, Emmanuel Lorenzo — Expanding the Toolkit for Synthetic Biology: Frameworks for Native-like Non-natural Gene Circuits (2015, Dissertation (Ph.D.))
• Sarisky, Catherine Ann — Exploration of the Determinants of Protein Structure and Stability by Protein Design (2005, Dissertation (Ph.D.))
• Zollars, Eric Stafford — Force Field Development in Protein Design (2006, Dissertation (Ph.D.))
• Morgan, Chantal Smith — Full Sequence Design of an Alpha-Helical Protein and Investigation of the Importance of Helix Dipole and Capping Effects in Helical Protein Design (2000, Dissertation (Ph.D.))
• Aceves, Aiden Joseph — Machine Learning and Modeling Methods for Protein Engineering (2022, Dissertation (Ph.D.))
• Lassila, Jonathan Kyle — Methods for Computational Enzyme Design and Application to the Chorismate-Prephenate Rearrangement (2007, Dissertation (Ph.D.))
• Lieblich, Seth Aharon — Non-Canonical Amino Acid Mutagenesis of Position B28 In Insulin with Proline Analogs (2017, Dissertation (Ph.D.))
• Dahiyat, Bassil I. — Protein Design Automation : Principles and Practice (1998, Dissertation (Ph.D.))
• Chitsaz, Mohsen — Protein Structure Refinement Algorithms (2014, Dissertation (Ph.D.))
• Datta, Deepshikha — Protein-Ligand Interactions: Docking, Design and Conformation Change (2003, Dissertation (Ph.D.))
• Marshall, Shannon Alicia — Stability and Conformational Specificity in Protein Design: Models for Binary Patterning and Electrostatics (2002, Dissertation (Ph.D.))
• Luo, Ji-Ye — Stability and Dynamics Studies of Apo-Azurin from Pseudomonas aeruginosa (1997, Dissertation (Ph.D.))
• Gillespie, Sarah Knox — Structure-Guided SCHEMA Recombination of VRC01-Class Antibodies for Reduced Polyreactivity (2025, Dissertation (Ph.D.))
• Schaus, Lucas Jean Nicolas — Studies on Scaling Throughput in Protein Engineering (2025, Dissertation (Ph.D.))
• Olson, Blade A. — Synthetic Antigen-Presenting Vesicles for Selective Immunomodulation (2026, Dissertation (Ph.D.))
• Street, Arthur George — Understanding and Designing Protein Beta-Sheets (2000, Dissertation (Ph.D.))