Pachter, Lior S.

Advisor — 16 thesises

• Fang, Meichen — A Biophysical Approach to Normalization and Trajectory Inference in Single-Cell RNA Sequencing Data Analysis (2025, Dissertation (Ph.D.))
• Felce, Catherine E. — Biophysical Modeling for Gene Expression and Evolution (2026, Dissertation (Ph.D.))
• Luebbert, Laura — Complexity of Transcriptomic Data Analysis and Implications for Biological Discovery (2024, Dissertation (Ph.D.))
• Moses, Lambda — Computation Foundations of Spatial Transcriptomics (2023, Dissertation (Ph.D.))
• Kil, Yeokyoung (Anne) — Engineering and Computational Tools for Salivary Biomedicine (2025, Dissertation (Ph.D.))
• Booeshaghi, Ali Sina — Foundations and Applications of Single-Cell RNA Sequencing (2022, Dissertation (Ph.D.))
• Carilli, Maria Theresa Natalina — Genetic Interrogation of Expression Regulation (2026, Dissertation (Ph.D.))
• Eldjarn Hjoerleifsson, Kristjan — Graph Modeling for Genomics and Epidemiology (2023, Dissertation (Ph.D.))
• Loving Ngo, Rebekah Kiana — Methods for Long Read RNA-Seq Transcriptomics (2025, Dissertation (Ph.D.))
• Beilinson, Vera Michelle — Multi-Scale Systems Analysis of the Squid-Vibrio Symbiosis (2027, Dissertation (Ph.D.))
• Dilanyan, Taleen Gaied — Open-Source Custom Beads for Single-Cell Transcriptomics (2024, Dissertation (Ph.D.))
• Chari, Tara Varada — Perturbing the Genome: From Bench to Biophysics (2024, Dissertation (Ph.D.))
• Sullivan, Delaney Kalcey — Software, Tools, and Methods Development for Single-Cell Transcriptomics (2025, Dissertation (Ph.D.))
• Yi, Lynn Donglin — Statistical Methods for Gene Differential Expression Analysis of RNA-Sequencing (2019, Dissertation (Ph.D.))
• Gorin, Gennady — Stochastic Foundations for Single-Cell RNA Sequencing (2023, Dissertation (Ph.D.))
• Gálvez Merchán, Ángel — Studies of mRNA Expression and Degradation (2023, Dissertation (Ph.D.))