Pierce, Niles A.

Advisor — 19 thesises

• Othmer, Jonathan Andrew — Algorithms for Mapping Nucleic Acid Free Energy Landscapes (2009, Dissertation (Ph.D.))
• Zadeh, Joseph N. — Algorithms for Nucleic Acid Sequence Design (2010, Dissertation (Ph.D.))
• Bois, Justin S. — Analysis of Interacting Nucleic Acids in Dilute Solutions (2007, Dissertation (Ph.D.))
• Dirks, Robert Michael — Analysis, Design, and Construction of Nucleic Acid Devices (2005, Dissertation (Ph.D.))
• Huang, Jining — Applications of Dynamic Nucleic Acid Nanotechnology in Closed-Loop Genetic Circuits and Detection of Viral Pathogens (2023, Dissertation (Ph.D.))
• Fornace, Mark Evan — Computational Methods for Simulating and Parameterizing Nucleic Acid Secondary Structure Thermodynamics and Kinetics (2022, Dissertation (Ph.D.))
• Hanewich-Hollatz, Mikhail Henning — Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function via Dynamic RNA Nanotechnology (2020, Dissertation (Ph.D.))
• Wolfe, Brian Robert — Design and Analysis of Nucleic Acid Reaction Pathways (2014, Dissertation (Ph.D.))
• Chen, Zhewei — Engineering Conditional Guide RNAs for Cell-Selective Regulation of CRISPR/Cas9 (2023, Dissertation (Ph.D.))
• Schwarzkopf, Ma'ayan — Engineering Nucleic Acid Mechanisms for Regulation and Readout of Gene Expression: Conditional Dicer Substrate Formation and Sensitive Multiplexed Northern Blots (2013, Dissertation (Ph.D.))
• Porubsky, Nicholas James — Enhanced Algorithms for Analysis and Design of Nucleic Acid Reaction Pathways (2020, Dissertation (Ph.D.))
• Guareschi, Matteo Michele — Enriching Architectures for Biosensing and Motor-Filament Systems Through the Programmability of DNA (2025, Dissertation (Ph.D.))
• Trivedi, Vikas — From Molecules to Organs : Microscopy and Multi-Scale Nature of Development (2015, Dissertation (Ph.D.))
• Husain, Naeem Shahab — Mapping mRNA and Protein Expression with High Signal-to-Background in Diverse Organisms (2016, Dissertation (Ph.D.))
• Acharya, Aneesh — Multiplexed Analysis of Diverse RNA Classes via Hybridization Chain Reaction (2016, Dissertation (Ph.D.))
• Schulte, Samuel Jordan — New HCR Technologies: 10-Plex Quantitative Spectral Imaging of RNAs and Proteins; Multiplexed Quantitative Imaging of Protein:Protein Complexes; and Sensitive, Instrument-Free, At-Home Pathogen Detection (2023, Dissertation (Ph.D.))
• Choi, Harry Ming Tak — Programmable In Situ Amplification for Multiplexed Bioimaging (2010, Dissertation (Ph.D.))
• Hochrein, Lisa Marie — Towards Conditional RNAi : Shape and Sequence Transduction with Small Conditional RNAs (2013, Dissertation (Ph.D.))
• Sternberg, Jonathan Ben-Zion — Signal Transduction with Hybridization Chain Reactions (2013, Dissertation (Ph.D.))