Pachter, Lior S.

Committee Member — 32 thesises

• Fang, Meichen — A Biophysical Approach to Normalization and Trajectory Inference in Single-Cell RNA Sequencing Data Analysis (2025, Dissertation (Ph.D.))
• Xiao, Fangzhou — Biocontrol of Biomolecular Systems: Polyhedral Constraints on Binding's Regulation of Catalysis from Biocircuits to Metabolism (2022, Dissertation (Ph.D.))
• Felce, Catherine E. — Biophysical Modeling for Gene Expression and Evolution (2026, Dissertation (Ph.D.))
• Thompson, John Warren Lenzi — Chemical Tools for Studying O-GlcNAc Glycosylation at the Systems Level (2020, Dissertation (Ph.D.))
• Luebbert, Laura — Complexity of Transcriptomic Data Analysis and Implications for Biological Discovery (2024, Dissertation (Ph.D.))
• Moses, Lambda — Computation Foundations of Spatial Transcriptomics (2023, Dissertation (Ph.D.))
• Kuintzle, Rachael Christine — Diversity in Notch Ligand-Receptor Signaling Interactions (2023, Dissertation (Ph.D.))
• Kil, Yeokyoung (Anne) — Engineering and Computational Tools for Salivary Biomedicine (2025, Dissertation (Ph.D.))
• Booeshaghi, Ali Sina — Foundations and Applications of Single-Cell RNA Sequencing (2022, Dissertation (Ph.D.))
• Li, Can — Gene Regulatory Analysis of the Developing Enteric Nervous System of Zebrafish (Danio rerio) (2025, Dissertation (Ph.D.))
• Carilli, Maria Theresa Natalina — Genetic Interrogation of Expression Regulation (2026, Dissertation (Ph.D.))
• Eldjarn Hjoerleifsson, Kristjan — Graph Modeling for Genomics and Epidemiology (2023, Dissertation (Ph.D.))
• Goronzy, Isabel Nadine — Higher-Order Chromatin States and Nuclear Structures Regulating Gene Expression (2024, Dissertation (Ph.D.))
• Taeb, Armeen — Latent-Variable Modeling: Algorithms, Inference, and Applications (2020, Dissertation (Ph.D.))
• Loving Ngo, Rebekah Kiana — Methods for Long Read RNA-Seq Transcriptomics (2025, Dissertation (Ph.D.))
• Markarian, Nicholas — Mixtures of Latent Variable Models for Interpreting Gene Expression Covariation from Pathways to Transcriptomes (2026, Dissertation (Ph.D.))
• Beilinson, Vera Michelle — Multi-Scale Systems Analysis of the Squid-Vibrio Symbiosis (2027, Dissertation (Ph.D.))
• Kim, Dong-Wook — Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior in Mice (2020, Dissertation (Ph.D.))
• Dilanyan, Taleen Gaied — Open-Source Custom Beads for Single-Cell Transcriptomics (2024, Dissertation (Ph.D.))
• Chari, Tara Varada — Perturbing the Genome: From Bench to Biophysics (2024, Dissertation (Ph.D.))
• Razo-Mejia, Manuel — Physical Biology of Cellular Information Processing (2022, Dissertation (Ph.D.))
• Torok, Zsofia Erzsebet — Resilience of a Precise Motor Behavior (2023, Dissertation (Ph.D.))
• Jiang, Jialong — Revealing Regulatory Network Organization Through Single-Cell Perturbation Profiling and Maximum Entropy Models (2024, Dissertation (Ph.D.))
• Sullivan, Delaney Kalcey — Software, Tools, and Methods Development for Single-Cell Transcriptomics (2025, Dissertation (Ph.D.))
• Yi, Lynn Donglin — Statistical Methods for Gene Differential Expression Analysis of RNA-Sequencing (2019, Dissertation (Ph.D.))
• Gorin, Gennady — Stochastic Foundations for Single-Cell RNA Sequencing (2023, Dissertation (Ph.D.))
• da Veiga Beltrame, Eduardo — Stories in Single Cell RNA Sequencing (2022, Dissertation (Ph.D.))
• Wittmann, Bruce James — Strategies and Tools for Machine Learning-Assisted Protein Engineering (2022, Dissertation (Ph.D.))
• Gálvez Merchán, Ángel — Studies of mRNA Expression and Degradation (2023, Dissertation (Ph.D.))
• He, Peng — The Changing Mouse Embryo Transcriptome at Whole Tissue and Single-Cell Resolution (2019, Dissertation (Ph.D.))
• Flores-Bautista, Emanuel — The Topology of Cellular Ontogeny (2025, Dissertation (Ph.D.))
• Wagner, Julian Morgan — Uncovering Mechanisms of Host Recognition, Host Finding and Host Specificity (2024, Dissertation (Ph.D.))